2009
Agoston, R., K. A. Soni, K. McElhany, M. L. Cepeda, U. Zuckerman, S. Tzipori, C. Mohacsi-Farkas, and S. D. Pillai. 2009. Rapid concentration of bacillus and clostridium spores from large volumes of milk, using continuous flow centrifugation. Journal of Food Protection 72: 666-668.
Alizadeh, A., L. Z. Hong, C. B. Kaelin, T. Raudsepp, H. Manuel, and G. S. Barsh. 2009. Genetics of sex-linked yellow in the syrian hamster. Genetics 181: 1427-1436.
Bauersachs, S., S. E. Ulbrich, V. Zakhartchenko, M. Minten, M. Reichenbach, H. D. Reichenbach, H. Blum, T. E. Spencer, and E. Wolf. 2009. The endometrium responds differently to cloned versus fertilized embryos. Proc. Natl. Acad. Sci. USA. 106: 5681-5686.
Barhoumi, R., J. M. Catania, A. R. Parrish, I. Awooda, E. Tiffany-Castiglioni, S. Safe, and R. C. Burghardt. 2009. Multiphoton spectral analysis of benzo[a]pyrene uptake and metabolism in breast epithelial cell lines. Journal of Toxicological Sciences 34: 13-25.
Bazer, F. W., T. E. Spencer, and G. A. Johnson. 2009. Interferons and uterine receptivity. Seminars in Reproductive Medicine 27: 90-102.
Behrends, S. M., R. K. Miller, F. M. Rouquette, R. D. Randel, B. G. Warrington, T. D. A. Forbes, T. H. Welsh, H. Lippke, J. M. Behrends, G. E. Carstens, and J. W. Holloway. 2009. Relationship of temperament, growth, carcass characteristics and tenderness in beef steers. Meat Science 81: 433-438.
Bergen, W. G., and G. Wu. 2009. Intestinal nitrogen recycling and utilization in health and disease. J. Nutr. 139: 821-825.
Bissett, W., Jr., R. Smith, L. G. Adams, R. Field, W. Moyer, T. Phillips, H. M. Scott, and J. A. Thompson. 2009. Geostatistical analysis of biomarkers of genotoxicity in cattle, bos taurus and bos taurus x bos indicus, sentinels near industrial facilities. Ecotoxicology 18: 87-9.
Bissett, W., R. Smith, L. G. Adams, R. Field, W. Moyer, T. Phillips, H. M. Scott, T. Wade, S. Sweet, and J. A. Thompson. 2009. An evaluation of the health status of the lavaca bay, texas ecosystem using crassostrea virginica as the sentinel species. Marine Pollution Bulletin 58: 280-286.
Brannstrom, C., and M. Neuman. 2009. Inventing the "Magic valley" Of south texas, 1905-1941. Geographical Review 99: 123-145.
Burghardt, R. C., J. R. Burghardt, J. D. Taylor, A. T. Reeder, B. T. Nguen, T. E. Spencer, K. J. Bayless, and G. A. Johnson. 2009. Enhanced focal adhesion assembly reflects increased mechanosensation and mechanotransduction at maternal-conceptus interface and uterine wall during ovine pregnancy. Reproduction 137: 567-582.
Carbone, D. L., K. A. Popichak, J. A. Moreno, S. Safe, and R. B. Tjalkens. 2009. Suppression of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-induced nitric-oxide synthase 2 expression in astrocytes by a novel diindolylmethane analog protects striatal neurons against apoptosis.Molecular Pharmacology 75: 35-43.
Castiglioni, J. A., M. I. Russell, B. Setlow, K. A. Young, J. C. Welsh, and I. Steele-Russell. 2009. An animal model of hypnotic pain attenuation.Behav. Brain Res. 197: 198-204.
Chacon, O., L. E. Bermudez, D. K. Zinniel, H. K. Chahal, R. J. Fenton, Z. Feng, K. Hanford, L. G. Adams, and R. G. Barletta. 2009. Impairment of d-alanine biosynthesis in mycobacterium smegmatis determines decreased intracellular survival in human macrophages. Microbiology 155: 1440-1450.
Chen, L. S., and P. Goodson. 2009. Barriers to adopting genomics into public health education: A mixed methods study. Genet. Med. 11: 104-110.
Chen, Y. H., N. Chatterjee, and R. J. Carroll. 2009. Shrinkage estimators for robust and efficient inference in haplotype-based case-control studies. Journal of the American Statistical Association 104: 220-233.
Chessa, B., F. Pereira, F. Arnaud, A. Amorim, F. Goyache, I. Mainland, R. R. Kao, J. M. Pemberton, D. Beraldi, M. J. Stear, A. Alberti, M. Pittau, L. Iannuzzi, M. H. Banabazi, R. R. Kazwala, Y.-p. Zhang, J. J. Arranz, B. A. Ali, Z. Wang, M. Uzun, M. M. Dione, I. Olsaker, L.-E. Holm, U. Saarma, S. Ahmad, N. Marzanov, E. Eythorsdottir, M. J. Holland, P. Ajmone-Marsan, M. W. Bruford, J. Kantanen, T. E. Spencer, and M. Palmarini. 2009. Revealing the history of sheep domestication using retrovirus integrations. Science 324: 532-536.
Collier, G. E., W. M. J. Murphy, and M. Espinoza. 2009. Phylogeography of the genus epiplatys (aplocheiloidea: Cyprinodontiformes). Molecular Phylogenetics and Evolution 50: 190-196.
Costa, F. R., T. N. S. Pereira, G. L. Hodnett, M. G. Pereira, and D. M. Stelly. 2008. Fluorescent in situ hybridization of 18s and 5s rdna in papaya (carica papaya l.) and wild relatives. Caryologia 61: 411-416.
Davis, B. W., T. Raudsepp, A. J. Pearks Wilkerson, R. Agarwala, A. A. Schaffer, M. Houck, B. P. Chowdhary, and W. J. Murphy. 2009. A high-resolution cat radiation hybrid and integrated fish mapping resource for phylogenomic studies across felidae. Genomics 93: 299-304. Cover Article
Delaigle, A., J. Q. Fan, and R. J. Carroll. 2009. A design-adaptive local polynomial estimator for the errors-in-variables problem.
Journal of the American Statistical Association 104: 348-359.
Fernandez-Lima, F. A., C. Becker, K. J. Gillig, W. K. Russell, S. E. Tichy, and D. H. Russell. 2009. Ion mobility-mass spectrometer interface for collisional activation of mobility separated ions.
Anal. Chem. 81: 618-624.
Figueiredo, J. F., S. D. Lawhon, K. Gokulan, S. Khare, M. Raffatellu, R. M. Tsolis, A. J. Baumler, B. A. McCormick, and L. G. Adams. 2009. Salmonella enterica typhimurium sipa induces cxc-chemokine expression through p38mapk and jun pathways.
Microbes and Infection 11: 302-310.
Filippi, A. M., C. Brannstrom, I. Dobreva, D. M. Cairns, and D. Kim. 2009. Unsupervised fuzzy artmap classification of hyperspectral hyperion data for savanna and agriculture discrimination in the brazilian cerrado.
Giscience & Remote Sensing 46: 1-23.
Fleming, J., G. Song, Y. Choi, T. E. Spencer, and F. W. Bazer. 2009. Interferon regulatory factor 6 (irf6) is expressed in the ovine uterus and functions as a transcriptional activator.
Molecular and Cellular Endocrinology 299: 252-260.
Freundlich, J. S., F. Wang, C. Vilcheze, G. Gulten, R. Langley, G. A. Schiehser, D. R. Jacobus, W. R. Jacobs, and J. C. Sacchettini. 2009. Triclosan derivatives: Towards potent inhibitors of drug-sensitive and drug-resistant mycobacterium tuberculosis.
ChemMedChem 4: 241-248.
Ftitz, W. A., T. M. Lin, S. Safe, R. W. Moore, and R. E. Peterson. 2009. The selective aryl hydrocarbon receptor modulator 6-methyl-1,3,8-trichlorodibenzofuran inhibits prostate tumor metastasis in tramp mice.
Biochemical Pharmacology 77: 1151-1160.
Gao, H. J., G. Y. Wu, T. E. Spencer, G. A. Johnson, and F. W. Bazer. 2009. Select nutrients in the ovine uterine lumen. II. Glucose transporters in the uterus and peri-implantation conceptuses.
Biology of Reproduction 80: 94-104.
Gao, H. J., G. Y. Wu, T. E. Spencer, G. A. Johnson, and F. W. Bazer. 2009. Select nutrients in the ovine uterine lumen. III. Cationic amino acid transporters in the ovine uterus and peri-implantation conceptuses.
Biology of Reproduction 80: 602-609.
Gao, H. J., G. Y. Wu, T. E. Spencer, G. A. Johnson, X. L. Li, and F. W. Bazer. 2009. Select nutrients in the ovine uterine lumen. I. Amino acids, glucose, and ions in uterine lumenal flushings of cyclic and pregnant ewes.
Biology of Reproduction 80: 86-93.
Gao, X. Q., M. Brodhagen, T. Isakeit, S. H. Brown, C. Gobel, J. Betran, I. Feussner, N. P. Keller, and M. V. Kolomiets. 2009. Inactivation of the lipoxygenase ZmLOX3 increases susceptibility of maize to Aspergillus spp.
Molecular Plant-Microbe Interactions 22: 222-231.
Gillenwaters, E. N., C. M. Seabury, J. S. Elliott, and J. E. Womack. 2009. Sequence analysis and polymorphism discovery in 4 members of the bovine cathelicidin gene family.
J. Hered. 100: 241-245.
Hoffmann, C., F. W. Bazer, J. Klug, H. Aupperle, C. Ellenberger, and H. A. Schoon. 2009. Immunohistochemical and histochemical identification of proteins and carbohydrates in the equine endometrium expression patterns for mares suffering from endometrosis.
Theriogenology 71: 264-274.
Hwang, C. C., W. M. Wu, T. J. Gentry, J. Carley, G. A. Corbin, S. L. Carroll, D. B. Watson, P. M. Jardine, J. Z. Zhou, C. S. Criddle, and M. W. Fields. 2009. Bacterial community succession during in situ uranium bioremediation: Spatial similarities along controlled flow paths.
ISME Journal 3: 47-64.
Ichite, N., M. B. Chougule, T. Jackson, S. V. Fulzele, S. Safe, and M. Singh. 2009. Enhancement of docetaxel anticancer activity by a novel diindolylmethane compound in human non-small cell lung cancer.
Clinical Cancer Research 15: 543-552.
Jobgen, W., C. J. Meininger, S. C. Jobgen, P. Li, M. J. Lee, S. B. Smith, T. E. Spencer, S. K. Fried, and G. Wu. 2009. Dietary l-arginine supplementation reduces white fat gain and enhances skeletal muscle and brown fat masses in diet-induced obese rats.
J. Nutr. 139: 230-237.
Kagan, V. E., A. Bayir, H. Bayir, D. Stoyanovsky, G. G. Borisenko, Y. Y. Tyurina, P. Wipf, J. Atkinson, J. S. Greenberger, R. S. Chapkin, and N. A. Belikova. 2009. Mitochondria-targeted disruptors and inhibitors of cytochrome c/cardiolipin peroxidase complexes: A new strategy in anti-apoptotic drug discovery.
Mol. Nutr. Food Res. 53: 104-114.
Kang, S., S. R. Evett, C. A. Robinson, B. A. Stewart, and W. A. Payne. 2009. Simulation of winter wheat evapotranspiration in texas and henan using three models of differing complexity.
Agricultural Water Management 96: 167-178.
Kim, W., Y. Y. Fan, R. Smith, B. Patil, G. K. Jayaprakasha, D. N. McMurray, and R. S. Chapkin. 2009. Dietary curcumin and limonin suppress cd4+ t-cell proliferation and interleukin-2 production in mice.
J. Nutr. 139: 1042-1048.
Knapp, G. S., J. W. Tsai, and J. C. Hu. 2009. The oligomerization of OxyR in Escherichia coli.
Protein Science 18: 101-107.
Koles, K., E. Repnikova, G. Pavlova, L. I. Korochkin, and V. M. Panin. 2009. Sialylation in protostomes: A perspective from drosophila genetics and biochemistry.
Glycoconj. J. 26: 313-324.
Konduri, S., J. Colon, C. H. Baker, S. Safe, J. L. Abbruzzese, A. Abudayyeh, M. R. Basha, and M. Abdelrahim. 2009. Tolfenamic acid enhances pancreatic cancer cell and tumor response to radiation therapy by inhibiting survivin protein expression.
Molecular Cancer Therapeutics 8: 533-542.
Kottapalli, K. R., R. Rakwal, J. Shibato, G. Burow, D. Tissue, J. Burke, N. Puppala, M. Burow, and P. Payton. 2009. Physiology and proteomics of the water-deficit stress response in three contrasting peanut genotypes.
Plant Cell and Environment 32: 380-407.
Lassala, A., F. W. Bazer, T. A. Cudd, P. Li, X. Li, M. C. Satterfield, T. E. Spencer, and G. Wu. 2009. Intravenous administration of l-citrulline to pregnant ewes is more effective than l-arginine for increasing arginine availability in the fetus.
J. Nutr. 139: 660-665.
Lin, C., D. C. Mahan, G. Y. Wu, and S. W. Kim. 2009. Protein digestibility of porcine colostrum by neonatal pigs. Livestock Science 121: 182-186.
Lu, Y., and S. H. Sze. 2009. Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues.
Nucleic Acids Research 37: 463-472.
Mace, E. S., J. F. Rami, S. Bouchet, P. E. Klein, R. R. Klein, A. Kilian, P. Wenzl, L. Xia, K. Halloran, and D. R. Jordan. 2009. A consensus genetic map of sorghum that integrates multiple component maps and high-throughput diversity array technology (DArT) markers.
BMC Plant Biol. 9: 13.
Maity, A., R. J. Carroll, E. Mammen, and N. Chatterjee. 2009. Testing in semiparametric models with interaction, with applications to gene-environment interactions.
Journal of the Royal Statistical Society Series B-Statistical Methodology 71: 75-96.
Medina, F., H. Li, S. B. Vinson, and C. J. Coates. 2009. Genetic transformation of midgut bacteria from the red imported fire ant (Solenopsis invicta).
Curr. Microbiol. online ahead of print.
Miller, W., D. I. Drautz, J. E. Janecka, A. M. Lesk, A. Ratan, L. P. Tomsho, M. Packard, Y. Zhang, L. R. McClellan, J. Qi, F. Zhao, M. T. P. Gilbert, L. Dalen, J. L. Arsuaga, P. G. P. Ericson, D. H. Huson, K. M. Helgen, W. J. Murphy, A. Gotherstrom, and S. C. Schuster. 2009. The mitochondrial genome sequence of the tasmanian tiger (Thylacinus cynocephalus).
Genome Research 19: 213-220.
Mortensen, C. J., Y. H. Choi, K. Hinrichs, N. H. Ing, D. C. Kraemer, S. G. Vogelsang, and M. M. Vogelsang. 2009. Embryo recovery from exercised mares.
Anim. Reprod. Sci. 110: 237-244.
Murray, S.C., W.L. Rooney, M.T. Hamblin, S.E. Mitchell, and S. Kresovich. 2009. Sweet sorghum genetic diversity and association mapping for brix and height.
Plant Genome 2:48-62.
Neupert, S., W. K. Russell, D. H. Russell, J. D. Lopez, R. Predel, and R. J. Nachman. 2009. Neuropeptides in Heteroptera: Identification of allatotropin-related peptide and tachykinin-related peptides using MALDI-TOF mass spectrometry.
Peptides 30: 483-488.
Newton, B. W., W. K. Russell, D. H. Russell, S. K. Ramaiah, and A. Jayaraman. 2009. Liver proteome analysis in a rodent model of alcoholic steatosis.
J. Proteome Res. 8: 1663-1671.
Paterson, A. H., J. E. Bowers, R. Bruggmann, I. Dubchak, J. Grimwood, H. Gundlach, G. Haberer, U. Hellsten, T. Mitros, A. Poliakov, J. Schmutz, M. Spannagl, H. B. Tang, X. Y. Wang, T. Wicker, A. K. Bharti, J. Chapman, F. A. Feltus, U. Gowik, I. V. Grigoriev, E. Lyons, C. A. Maher, M. Martis, A. Narechania, R. P. Otillar, B. W. Penning, A. A. Salamov, Y. Wang, L. F. Zhang, N. C. Carpita, M. Freeling, A. R. Gingle, C. T. Hash, B. Keller, P. Klein, S. Kresovich, M. C. McCann, R. Ming, D. G. Peterson, R. Mehboob ur, D. Ware, P. Westhoff, K. F. X. Mayer, J. Messing, and D. S. Rokhsar. 2009. The sorghum bicolor genome and the diversification of grasses.
Nature 457: 551-556.
Perumal, R., M. A. Menz, P. J. Mehta, S. Katile, L. A. Gutierrez-Rojas, R. R. Klein, P. E. Klein, L. K. Prom, J. A. Schlueter, W. L. Rooney, and C. W. Magill. 2009. Molecular mapping of Cg1, a gene for resistance to anthracnose (Colletotrichum sublineolum) in sorghum.
Euphytica 165: 597-606.
Pfeiffer, C. E. S., D. A. King, L. M. Lucia, E. Cabrera-Diaz, G. R. Acuff, R. D. Randel, T. H. Welsh, R. A. Oliphint, K. O. Curley, R. C. Vann, and J. W. Savell. 2009. Influence of transportation stress and animal temperament on fecal shedding of escherichia coli O157:H7 in feedlot cattle.
Meat Science 81: 300-306.
Pieper, U., R. Chiang, J. J. Seffernick, S. D. Brown, M. E. Glasner, L. Kelly, N. Eswar, J. M. Sauder, J. B. Bonanno, S. Swaminathan, S. K. Burley, X. Zheng, M. R. Chance, S. C. Almo, J. A. Gerlt, F. M. Raushel, M. P. Jacobson, P. C. Babbitt, and A. Sali. 2009. Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies.
J. Struct. Funct. Genomics 10: 107-125.
Qian, X. N., S. H. Sze, and B. J. Yoon. 2009. Querying pathways in protein interaction networks based on hidden markov models.
Journal of Computational Biology 16: 145-157.
Qu, C. C., and J. Hahn. 2009. Computation of arrival cost for moving horizon estimation via unscented Kalman filtering.
Journal of Process Control 19: 358-363.
Ranjith-Kumar, C. T., A. Murali, W. Dong, D. Srisathiyanarayanan, R. Vaughan, J. Ortiz-Alacantara, K. Bhardwaj, X. Li, P. Li, and C. C. Kao. 2009. Agonist and antagonist recognition by RIG-I, a cytoplasmic innate immunity receptor.
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Rasberry, C. N., and P. Goodson. 2009. Predictors of secondary abstinence in U.S. College undergraduates.
Arch. Sex. Behav. 38: 74-86.
Rhoades, R. D., J. E. Sawyer, C. H. Ponce, D. K. Lunt, and S. B. Smith. 2009. Substrate utilization and dose response to insulin by subcutaneous adipose tissue of angus steers fed corn- or hay-based diets.
J. Anim. Sci. Online ahead of print.
Roberts, R. M., G. W. Smith, F. W. Bazer, J. Cibelli, G. E. Seidel, Jr., D. E. Bauman, L. P. Reynolds, and J. J. Ireland. 2009. Farm animal research in crisis.
Science 324: 468-469.
Saillant, E., M. A. Renshaw, D. M. Gatlin, W. H. Neill, R. R. Vega, and J. R. Gold. 2009. An experimental assessment of genetic tagging and founder representation in hatchery-reared red drum (Sciaenops ocellatus) used in stock enhancement.
Journal of Applied Ichthyology 25: 108-113.
Sakai, A., A. A. Fedorov, E. V. Fedorov, A. M. Schnoes, M. E. Glasner, S. Brown, M. E. Rutter, K. Bain, S. Chang, T. Gheyi, J. M. Sauder, S. K. Burley, P. C. Babbitt, S. C. Almo, and J. A. Gerlt. 2009. Evolution of enzymatic activities in the enolase superfamily: Stereochemically distinct mechanisms in two families of cis,cis-muconate lactonizing enzymes.
Biochemistry 48: 2569-2570.
Schmidt-Ott, U., A. M. Rafiqi, K. Sander, and J. S. Johnston. 2009. Extremely small genomes in two unrelated dipteran insects with shared early developmental traits.
Dev. Genes. Evol. 219:207-210.
Shakirov, E. V., T. D. McKnight, and D. E. Shippen. 2009. POT1-independent single-strand telomeric DNA-binding activities in brassicaceae.
Plant J. Online ahead of print.
Shaw, G. M., S. L. Carmichael, S. E. Vollset, W. Yang, R. H. Finnell, H. Blom, O. Midttun, and P. M. Ueland. 2009. Mid-pregnancy cotinine and risks of orofacial clefts and neural tube defects.
J. Pediatr. 154: 17-19.
Sitzlar, M. A., M. A. Mora, J. G. W. Fleming, F. W. Bazer, J. W. Bickham, and C. W. Matson. 2009. Potential effects of environmental contaminants on P450 aromatase activity and DNA damage in swallows from the Rio Grande and Somerville, Texas.
Ecotoxicology 18: 15-21.
Smith, S. B., H. Kawachi, C. B. Choi, C. W. Choi, G. Wu, and J. E. Sawyer. 2009. Cellular regulation of bovine intramuscular adipose tissue development and composition.
J. Anim. Sci. 87: E72-82.
Song, G., K. A. Dunlap, J. Kim, D. W. Bailey, T. E. Spencer, R. C. Burghardt, G. F. Wagner, G. A. Johnson, and F. W. Bazer. 2009. Stanniocalcin 1 is a luminal epithelial marker for implantation in pigs regulated by progesterone and estradiol.
Endocrinology 150: 936-945.
Song, G., M. C. Satterfield, J. Kim, F. W. Bazer, and T. E. Spencer. 2009. Progesterone and interferon tau regulate leukemia inhibitory factor receptor and il6st in the ovine uterus during early pregnancy.
Reproduction 137: 553-565.
Song, W., Y. Shi, M. Xiao, H. Lu, T. Qu, P. Li, G. Wu, and Y. Tian. 2009. In vitro bactericidal activity of recombinant human beta-defensin-3 against pathogenic bacterial strains in human tooth root canal.
Int. J. Antimicrob. Agents 33: 237-243.
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Cover Article
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Science 324: 528-532.
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Journal of the Royal Statistical Society Series B-Statistical Methodology 71: 425-445.
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