Texas A&M Institute for Genome Sciences and Society (TIGSS) has established number of shared resources to support genomics research.

 

Bioinformatics:

A High Performance Computing Cluster (TIGSS HPCC) has been established in 2012 specifically tailored for Bioinformatics / Computational Biology research. The compute cluster is located in CSC building.

 

We also provide Bioinformatics consultation and computational analyses of high-throughput data, not limited to Next-generation sequencing data. We follow best practices as specified in many peer reviewed journals and protocol articles. We document every step of the analyses so that you will be able to replicate the analyses if you choose to do so. The following is the simple price structure for data analyses:

  • Initial Bioinformatics Consultation / Discussions of Project Design: FREE
  • Small assistance / Custom analysis steps / Preliminary analyses ( less than 2 hours): FREE
  • Comprehensive data analyses (Internal): $50 / hr
  • Comprehensive data analyses (External Academic / Federal): $75 / hr
  • Comprehensive data analyses (External Commercial): $100 / hr

 

Since many tools and open source software produces different outputs in different data formats, please contact us regarding your requirements.

 

Contact Kranti Konganti for more information.

 

Experimental Genomics:

Molecular Genomics Lab houses various instruments and lab equipment to support genomics-based research and is located in Reynolds Medical Building 446A. Training and experimental support is available. Please visit the TAMU Core Facilities page for available services.

 

Contact Andrew Hillhouse for more information about pricing and any other details.

 

Rodent Preclinical Phenotyping:

The mouse phenotyping equipment houses various instruments to measure and quantitate mouse physiology and behavior. All of the phenotyping equipment is located at the LARR and Reynolds Medical Buildings. Training and experimental support is available. Please visit the iLab TAMU Core Facilities page for available services.

 

Contact Alexandra Trott for more information and regarding any other details.

 

Reserve equipment:

Most of the equipment listed below can be reserved through the iLab portal.

To use the facilities managed via the iLab system, you will need to establish an account.  For a member of a lab to be able to make requests in iLab, the lab’s PI must already be a registered user.

PIs cannot register for an account using the Login button.  To be added to the system, PIs need to send their UIN and Netid username to

External users who are not eligible for a TAMU Netid can sign up or login using iLab credentials.

After you have an account, login at the CoreFacilities page and view all the services provided.

Cytek Aurora

Protein

The Cytek Aurora is a prodigy incorporating a unique combination of patent-pending innovative technologies that takes flow cytometry to the

Cytek Aurora

Protein Simple- Jess

Protein

Jess automates traditional Western blotting while maximizing multiplexing with multiple detection channels. Automation of protein separation and immunodetection eliminates many

Protein Simple- Jess

DxC 700 AU

Chemical

The DxC 700 AU Chemistry Analyzer is the latest innovation in reliable chemistry systems. The DxC 700 AU is used

DxC 700 AU

BioRender

About BioRender A New Way to Render The Texas A&M Institute for Genome Sciences and Society has teamed up with

BioRender

Poster Board Stands

Start Your Conference Off Right The Texas Institute for Genome Sciences and Society is  proud to announce that we are

Poster Board Stands

RPPC Manual & Standard Operating Procedures

Manual & SOPs

The Rodent Preclinical Phenotyping Core (RPPC) offers our users access to all of our general standard operating procedures. The RPPC standard operating procedures provides detailed notes on how to operate all equipment within our suite.

RPPC Manual & Standard Operating Procedures

RPPC Prices

Price List

TAMU Price List:  For outside institution prices contact Alexandra Trott. Noldus Barnes Maze/ hr $16 Noldus Radial Arm Maze/ hr

RPPC Prices

Digigait

Behavior

  Digigait Analysis System is the most widely applicable and comprehensive gait analysis instrumentation available. It can measure voluntary and treadmill

Digigait

OsmoPro Multi-Sample Micro-Osmometer

Chemical

The OsmoPRO features a convenient carousel design that handles up to 20 samples, an intuitive touchscreen interface, and industry-leading performance.

OsmoPro Multi-Sample Micro-Osmometer

Radial Arm Maze

Behavior

The radial arm maze is a test for spatial, working, and reference learning and memory in mice and allows for

Radial Arm Maze

Barnes Maze

Behavior

The Barnes maze is a well-known paradigm to study spatial learning and memory. This maze consists of a circular table

Barnes Maze

Leica ASP300 Tissue Processor

Histology

The Leica ASP300 is designed for routine clinical and research histopathology and is an innovative, smart processor for paraffin infiltration

Leica ASP300 Tissue Processor

Rotarod Test for Mice

Behavior

The Rotarod Test is used to assess motor coordination or fatigue resistance on mice and rats using one unit in

Rotarod Test for Mice

Leica EG1150 Tissue Embedding

Histology

The Leica EG1150 modular tissue embedding center incorporates two separate components, the Leica EG1150 C cold plate, and the Leica EG1150H

Leica EG1150 Tissue Embedding

Leica Rotary Microtome 2165

Histology

The highly versatile LEICA RM 2165 fully motorized rotary microtome is both suitable for routine applications in the medical laboratory and for semi-thin plastic

Leica Rotary Microtome 2165

TubeWriter 360

TubeWriter

Any tube, any vial, any size: The TubeWriter 360 prints on anything that will fit under the printhead including the

TubeWriter 360

lncRNApipe

Open Source Software

lncRNApipe is a reference annotation based automated pipeline to identify non-coding RNAs, both known and novel from RNA-Seq reads. It

lncRNApipe

gQTL

Open Source Software

Multi-parental recombinant inbred populations, such as the Collaborative Cross (CC) mouse genetic reference population, are increasingly being used for analysis

gQTL

Maxwell 16 (Promega)

Molecular Biology

The Maxwell 16 Integrated System combines compact instrumentation, optimized automated methods, prefilled reagent cartridges, service and support to save time,

Maxwell 16 (Promega)

Tape Station (Agilent)

Molecular Biology

The Bio-Plex Pro Wash Station eliminates manual wash steps from Bio-Plex Assays, making them as easy as ELISAs. The wash

Tape Station (Agilent)

MinION (Oxford Nanopore)

Sequencing

Oxford Nanopore DNA sequencer for real time, long-read, and low cost sequencing. Ideal for closing gaps in de novo genome

MinION (Oxford Nanopore)

Cytation 5 (BioTek)

Cell Biology

Cell imaging multi-mode microplate reader that combines automated digital microscopy and conventional microplate detection. Includes both high sensitivity filter-based detection

Cytation 5 (BioTek)

10X Chromium

Sequencing

Chromium Single Cell 3’ performs deep profiling of complex cell populations with high-throughput digital gene expression on a cell-by-cell basis.

10X Chromium

EchoMRI-100H

Metabolic

EchoMRI-100H for body composition analysis of whole body fat, lean, free water, and total water masses in live animals weighing

EchoMRI-100H

Stortz Rodent Endoscope

Cancer

For use in small animal endoscopy for various diagnostic, surgical, and orthopedic indications

Stortz Rodent Endoscope

Heart Monitoring ECGenie

Cardiovascular

The Mouse Specifics, Inc.’s ECGenie is a rapid non-invasive solution for recording electrocardiograms (ECGs) in awake mice, rats, and guinea

Heart Monitoring ECGenie

TSE Phenomaster

Metabolic

TSE Phenomaster measures food/water intake, activity monitoring, and calorimetry/O2/CO2 measurements.

TSE Phenomaster

Hatteras Diuresis Cages

Metabolic

Unique nonwetting polymethylpentene funnel and cone design automatically separates feces and urine for accurate metabolic monitoring without urine wash-over. Exterior

Hatteras Diuresis Cages

Morris Water Maze

Behavior

The Water maze is a well-known paradigm to study spatial learning and memory. The maze consists of a large circular

Morris Water Maze

Small Animal Stereotaxic System

Behavior

Small animal stereotaxic system provides researchers with not only greater ease, but more accurate readings than the vernier scales commonly

Small Animal Stereotaxic System

Shuttle Cages with Shock Floor

Behavior

Fully modular Habitest configuration for active and passive Avoidance experiments in rodents. With Habitest, users can create an endless variety

Shuttle Cages with Shock Floor

Vevo 3100 Ultrasound

Cancer

With a powerful combination of high frame rates and advanced image processing, the Vevo 3100 reduces speckle noise and artifacts

Vevo 3100 Ultrasound

Rotarod Test Rats and Mice

Behavior

The IITC Rotarod Test is used to assess the effect of drugs on the motor coordination or fatigue resistance on

Rotarod Test Rats and Mice

Coulbourn Habitest System

Behavior

HABITEST is designed to make it possible to implement most behavioral test protocols in a single system of modular test

Coulbourn Habitest System

Chatillon Force Measurement

Skeletomuscular

The Chatillon Grip Strength allows investigators to test the maximum force of a mouse’s grip which will be stored on

Chatillon Force Measurement

Abaxis VetScan VS2 Chemistry Analyzer

Chemical

Abaxis VetScan VS2 Chemistry Analyzer is a state-of-the-art chemistry, electrolyte, immunoassay and blood gas analyzer that delivers uncompromising accuracy from

Abaxis VetScan VS2 Chemistry Analyzer

Abaxis VetScan HM5 Hematology System

Chemical

The Abaxis VetScan HM5 Color Hematology System is a fully-automated, five-part differential hematology analyzer displaying a comprehensive 22-parameter complete blood

Abaxis VetScan HM5 Hematology System

Bio-Plex 200 (Bio-Rad)

Molecular Biology

A suspension array system that supports analysis of protein and nucleic acids in a multiplex solution detecting up to 100

Bio-Plex 200 (Bio-Rad)

Open Source Software

Open Source Software

The TIGSS High Performance Computing cluster hosts a broad range of tools such as BWA, ABySS, SOAPdenovo, Velvet, TopHat, Cufflinks,

Open Source Software