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2015 Summer Bioinformatics Workshops

Texas A&M Institute for Genome Sciences and Society 2015 Summer Bioinformatics/Biostatistics Workshops

A series of summer workshops is schedule for on campus bioinformatics training. All workshops are free-of-charge, but registration is required due to limited space. Locations of each workshop will depend on computational needs and may or may not have TTVN access. Details of each workshop and registration is on the Summer 2015 Bioinformatics/Biostatistics Workshop page. For more information, contact raramayo [at] tamu.edu (subject: TIGSS%20Workshops) (Dr. Rudolfo Aramayo).

June 17: Workshop 1 - R/R-Studio Workshop

July 13: Workshop 2 - NCBI Accessign Genome, Assemblies and Annotations

July 14: Workshop 3 - NCBI Accessing NCBI Human Variation and Medical Genetics Resources

July 15: Workshop 4 - Basic and New Features UCSC Genome Browser

July 16: Workshop 5 - Getting More Out of the UCSC Genome Browser

July 20: Workshop 6 - Galaxy

July 21: Workshop 7 - Biological Interpretation Using Ingenuity Pathway Analysis (IPA)

July 21: Workshop 8 - Fundamental First Steps of NGS Analysis in CLC Genomics Workbench

July 22: Workshop 9 -  DNAStar Lasergene - Analysis Unified

July 27: Workshop 10 - Integrated Molecualr Biology (in silico cloning) Tools using Geneious

July 27: Workshop 11 - Efficient NGS Tools for Sequence Assembly and Analysis using Geneious

July 28: Workshop 12 - Galaxy

July 29: Workshop 13 - Genetic and Genomic Analysis of Complex Traits: hands-on Worshop using Open Online Genetics Resrouces

Details of each workshop and pre-registration is on the Summer 2015 Bioinformatics/Biostatistics Workshop page.

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Recent Publications

Zreik, Riyam, Krystal Soyalp, Steve Ruiz, Russell Ward, Sheila Dobin, Xiangbai Chen, Lina Liu, and Arundhati Rao. "Ultrasound-Guided Fine-Needle Aspiration of a Posterior Neck Dedifferentiated Liposarcoma With MDM2 Fluorescence In Situ Hybridization Performed on a Pap-Stained Smear." Diagnostic Cytopathology 43 (2015): 320-324.
Xue, Chaohui, Lanwei Zhang, Rongbo Fan, Shumei Wang, Hongbo Li, Xue Luo, Wenli Liu, and Wei Song. "Protective action of S-layer proteins from Lactobacillus paracasei M7 against Salmonella infection and mediated inhibition of Salmonella-induced apoptosis." European Food Research and Technology 240 (2015): 923-929.
Yan, Ke-lan, Run-hua Fan, Min Chen, Kai Sun, Long-wei Yin, Hui Li, Shi-bing Pan, and Ming-xun Yu. "Perovskite (La,Sr)MnO3 with tunable electrical properties by the Sr-doping effect." Journal of Alloys and Compounds 628 (2015): 429-432.
Williams, Charles H., Jonathan E. Hempel, Jijun Hao, Audrey Y. Frist, Michelle M. Williams, Jonathan T. Fleming, Gary A. Sulikowski, Michael K. Cooper, Chin Chiang, and Charles C. Hong. "An invivo chemical genetic screen identifies phosphodiesterase 4 as a pharmacological target for hedgehog signaling inhibition." Cell reports 11 (2015): 43-50.
Wang, Guan-Feng, Renchun Fan, Xianping Wang, Daowen Wang, and Xiangqi Zhang. "TaRAR1 and TaSGT1 associate with TaHsp90 to function in bread wheat (Triticum aestivum L.) seedling growth and stripe rust resistance." Plant Molecular Biology 87 (2015): 577-589.
Vogt, Sarah J., Jeremy R. Smith, Joseph D. Seymour, Alistair J. Carr, Matt D. Golding, and Sarah L. Codd. "Assessment of the changes in the structure and component mobility of Mozzarella and Cheddar cheese during heating." Journal of Food Engineering 150 (2015): 35-43.
Ruiz-Gonzalez, Irene, Megan Minten, Xiaoqiu Wang, Kathrin A. Dunlap, and Fuller W. Bazer. "Involvement of TLR7 and TLR8 in conceptus development and establishment of pregnancy in sheep." Reproduction 149 (2015): 305-316.
Shybut, Theodore B., Charles E. Vega, Jebran Haddad, Jerry W. Alexander, Jonathon E. Gold, Philip C. Noble, and Walter R. Lowe. "Effect of lateral meniscal root tear on the stability of the anterior cruciate ligament-deficient knee." The American journal of sports medicine 43 (2015): 905-11.
Reaves, Denise K., Erika Ginsburg, John J. Bang, and Jodie M. Fleming. "Persistent organic pollutants and obesity: are they potential mechanisms for breast cancer promotion?" Endocrine-related cancer 22 (2015): R69-86.
Sundararajan, Radhika, Monique A. Wyatt, Sarah Woolf-King, Emily E. Pisarski, Nneka Emenyonu, Winnie R. Muyindike, Judith A. Hahn, and Norma C. Ware. "Qualitative Study of Changes in Alcohol Use Among HIV-Infected Adults Entering Care and Treatment for HIV/AIDS in Rural Southwest Uganda." AIDS and behavior 19 (2015): 732-41.

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